Table of available file formatsΒΆ


If you would like your data format to appear in the table below, please contact us via GitHub.

The following table contains the various different file formats currently implemented in ConKit.

The type of information the file contains
The source of the file
The keyword to be used in ConKit
Type Format Keyword
Contact Prediction Bbcontacts bbcontacts*
BCLContacts bclcontacts*
Casp RR casprr
CCMpred ccmpred
COMSAT comsat
EPCMap epcmap
EVfold (EVcouplings) evfold
FreeContact freecontact
GREMLIN gremlin
MemBrain membrain
mmCIF mmcif*
Pcons[C|C2|C3] pconsc, pconsc2, pconsc3
Protein DataBank (PDB) pdb*
plmDCA plmdca
[Meta]PSICOV psicov, metapsicov
Sequence Alignment A3M a3m, a3m-insertsa
FASTA fasta
Jones jones b
Stockholm stockholm

* These formats do not have a write() function.

a The a3m-inserts keyword stores the alignment including insert states.

b The jones format corresponds to one sequence per line without sequence header information.