# conkit.plot.contactmap module¶

A module to produce a contact map plot

class ContactMapFigure(hierarchy, other=None, reference=None, altloc=False, use_conf=False, lim=None, **kwargs)[source]

A Figure object specifically for a ContactMap

This figure will illustrate the contacts in a contact map. This plot is a very common representation of contacts. With this figure, you can illustrate either your contact map by itself, compared against a second contact map, and/or matched against contacts extracted from a contact map.

hierarchy

ContactMap – The default contact map hierarchy

other

ContactMap – The second contact map hierarchy

reference

ContactMap – The reference contact map hierarchy

altloc

bool – Use the res_altloc positions [default: False]

use_conf

bool – The marker size will correspond to the raw score [default: False]

Examples

>>> import conkit

draw()[source]
hierarchy
lim
other
redraw(*args, **kwargs)
reference